RNA-seq

[WIP] Gene Quantification from RNA-seq reads using STAR

Mapping RNA-seq reads using STAR on an Azure VM

Mapping RNA-seq reads using STAR on a Google Cloud VM

Make a genome index using STAR

Download large files from NCBI Sequence Read Archive (using the SRA Toolkit)

Genome Browsing

Open a Genome in JBrowse

Open a BAM file in JBrowse

Convert a wig file into a bigWig file

How to View a .wig file in JBrowse

[WIP] Modify which gtf-track features are shown

File formats

What’s a fasta index (.fai) file?

Glossary

Contig